PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g059130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 870aa    MW: 94875.9 Da    PI: 6.8611
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g059130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Csa03g059130.1 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                    5679*****************************************************97 PP

2START168.16.1e-531954032205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+++d++ W + ++++++++v+ ++  g+++l 
  Csa03g059130.1 195 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELL 288
                     7899******************************************************.7777777777****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     + +l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ s+q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l+
  Csa03g059130.1 289 YVQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLY 383
                     ********************************************999999********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s  + ++kt++a+l+++++
  Csa03g059130.1 384 ESPKVLAQKTTMAALRQLKQ 403
                     ****************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-151379IPR001356Homeobox domain
SuperFamilySSF466895.56E-171579IPR009057Homeodomain-like
CDDcd000869.87E-171676No hitNo description
PfamPF000463.1E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-181874IPR009057Homeodomain-like
PROSITE profilePS5007115.2731975IPR001356Homeobox domain
CDDcd146861.20E-668107No hitNo description
PROSITE profilePS5084825.559185413IPR002913START domain
CDDcd088753.83E-73189405No hitNo description
SuperFamilySSF559618.38E-36194406No hitNo description
Gene3DG3DSA:3.30.530.202.6E-20194376IPR023393START-like domain
SMARTSM002343.2E-38194404IPR002913START domain
PfamPF018521.5E-50195403IPR002913START domain
PfamPF086701.3E-42727849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT  120
HNPSLPAKDT SCESVVTSGQ HQLASQNPPR DASPAGLPSL PAKDTSCESV VTSGQHQLAG  180
QNPPRDASPA GLLSIAEETL AEFLSKATGT AVEWVQMPGM KPGPDSIGII AISHGCTGVA  240
ARACGLVGLE PTRVAEIVKD RPSWFRECRA VDVMNVLPTA NGGTIELLYV QLYAPTTLAP  300
PRDFWLLRYT SVLEDGSLVV CERSLKSTQN GPSMPLVQNF VRAEMLPSGY LIRPCDGGGS  360
IIHIVDHMDL EACSVPEVLR PLYESPKVLA QKTTMAALRQ LKQIAQEVTQ TNSSVNGWGR  420
RPAALRALSQ RLSRGFNEAV NGFTDEGWSV IGDSMDDVTI TVNSSPDKLM GLNLAFSNGF  480
APVSSVVLCA KASMLLQNVP PAILLRFLRE HRSEWADNNI DAYLAAAVKV GPCSARVGGF  540
GGQVILPLAH TIEHEEFMEV IKLEGLGHSP EDAIVPRDIF LLQLCSGMDE SAVGTCAELI  600
FAPIDASFAD DAPLLPSGFR IIPLDSAKEV SSPNRTLDLA SALEVGSAGT KASTDQSGNS  660
TCARSVMTIA FEFGIESHMQ EHVASMARQY VRGIISSVQR VALALSPSHI SSQVGLRTPL  720
GTPEAQTLAR WICQSYRGYM GVELLKSNSE GNESVLKNLW HHTDAIICCS MKALPVFTFA  780
NQAGLDMLET TLVALQDISL EKIFDDNGRK TLCSEFPQIM QQGFACLQGG ICLSSMGRPV  840
SYERAVAWKT KLLPFGCSKT VRLFFLMLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4394490.0AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBankAY0605560.0AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500807.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLR0IKW40.0R0IKW4_9BRAS; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10033350.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein